Deliciously sweet gluten free protein blueberry muffins are the perfect way to start your day! Plus, I have great news for you! These fluffy, soft muffins are also refined sugar and dairy-free. Talk about a huge win.

A stack of three blueberry muffins.

When you think of blueberry muffins, you automatically think of eating them for breakfast. This is an excellent idea because they are easy to make, taste scrumptious, and are perfect for grab-and-go. However, at my house, we also love them as a snack! I will often send them to school with the kids or work with my husband so they can have a mid-day protein boost.

As a mom, I must feed my family the best nutrient-rich foods I can. That is why I decided to sneak in some protein by adding collagen protein. Guess what! No one even knows or cares because these blueberry protein muffins taste amazing!

These gluten-free blueberry muffins are light, fluffy, and full of plump, juicy blueberries and pecans. Every bite is bursting with flavor and will soon become a go-to recipe. If you love muffins as much as we do, check out my best gluten free muffins recipes.

Allergen Information:

These homemade muffins are gluten-free, dairy-free, oat-free, and soy-free.

A basket of gluten free blueberry protein muffins.
Top Pick
King Arthur, Measure for Measure Flour 3 lbs

This is one of my favorite gluten-free flour blends for cookies, cakes, pie crust, biscuits, and muffins! (Do not use this flour blend for yeast recipes.)

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Ingredient Notes:

  • Collagen Protein – Collagen protein is a flavorless protein powder I love to use in baking because it adds no flavor. I like both Great Lakes and Vital Proteins.
  • Gluten Free Flour Blend – I tested this recipe using Bob’s Red Mill 1 to 1 Gluten Free Flour Blend and King Arthur’s Measure for Measure Gluten Free Blend. That doesn’t mean others will not work; I have not tested other flours.
  • Coconut Sugar – I used coconut sugar, but you can use regular cane or brown sugar in this recipe if you prefer.
  • Xanthan Gum – If your gluten free flour blend doesn’t contain xanthan gum or guar gum, please add ¾ teaspoon.
  • Baking Powder and Salt – I recommend using aluminum-free baking powder.
  • Bananas – Use ripe bananas!
  • Eggs – Use size large.
  • Non-Dairy Milk—I used almond milk, but any plant-based milk or even regular milk is fine.
  • Coconut Oil – You can also use other light oils or butter if you can have dairy.
A blueberry protein muffin with a bite taken out on a plate.

Step-By-Step Photos and Directions:

The dry ingredients in a bowl.

Step 1: Add the dry ingredients to a large mixing bowl and whisk to blend. In a smaller bowl, add the wet ingredients and mix well.

All of the muffin ingredients including blueberries in a bowl ready to mix.

Step 2: Pour the wet ingredients into the dry ingredients, including the pecans and blueberries. Mix until the batter is “just mixed.” The secret to light and fluffy muffins is to  NOT overmix the batter. Note the nuts are optional.

The blueberry protein muffin batter in a bowl.

📢 Sandi says: Every gluten-free flour blend has a different starch-to-grain ratio. The brand of gluten-free flour you use will affect the moisture of the batter. If your cake batter is too runny, add more flour, and if it is too thick, add more liquids.
Read Why Gluten-Free Flour Blends Vary to learn more about this.

Step 3: Place parchment paper muffin liners into a muffin pan. You can also use a gluten free baking spray if you prefer. Put the batter into a muffin tin and fill each cup ¾ full.

Step 4: Bake the muffins at 350º F for 20-24 minutes. The baking time will vary depending on the depth of your muffin pan and its material. When the muffins are finished baking, remove them from the oven to a cooling rack and allow them to cool.

To test for doneness, insert a toothpick into the center of the muffins. If the toothpick comes out clean, the muffins are done baking. If you see batter or crumbs, the muffins need to bake longer.

Try other fruit:

If you don’t have blueberries on hand, don’t worry!! Here are some ideas that you can try as you experiment with this yummy protein muffin recipe:

  • Raspberries
  • Strawberries
  • Walnuts
  • Almond Slivers

Recipe FAQ:

Love a domed top muffin? Here is the secret to getting those big dome tops: Bake at 425º F for the first 5 minutes, then reduce the temperature to 350º F.

Why do my muffins fall sometimes?

When you bake blueberry protein muffins, and you notice they fall after you remove them from the oven, there is an easy fix. They fell because too much air was incorporated into the batter when stirred.

So when you remove the gluten free muffins from the oven, the air will collapse and cause the muffin to do the same. To prevent this, try not to over-stir the batter. It is ready to be put in the oven when there are no large lumps, and the batter is moist.

Why do muffins get sticky on top?

Have you ever noticed that muffin tops can get sticky when baked and placed in a container? This is because when muffins are placed in an airtight container, the moisture inside them will naturally rise to the surface as they age.

The good news is that if you are baking at home, you already know your food isn’t loaded with preservatives. Using preservatives is really the only way to prevent this from happening as the healthy protein muffins begin to age, and no one wants that!

What we do is the easiest solution is to wrap the high-protein muffins individually and then place them in an airtight container in the freezer. Then, you can just grab what you need, and you don’t have to worry about the tops being sticky any longer.

How long will these muffins keep fresh?

These muffins will keep fresh for up to 4 days in an airtight container or up to 4 months in the freezer.

How do you freeze muffins?

Freeze the muffins by placing cooled muffins in a freezer bag. Place flat in the freezer.

Don’t forget to take a look at my gluten free pantry essentials guide. It’s filled with lots of helpful information for baking gluten free.

More Gluten Free Muffin Recipes:

Love This Recipe?

If you made and enjoyed this recipe, I would be incredibly grateful if you could leave a comment below. Please include which flour blend you used. This helps others know that this recipe is delicious. Thank you!

Fluffy Gluten Free Blueberry Protein Muffins

Sandi Gaertner
Light and fluffy gluten free protein muffins with blueberries and banana. Kids will never know these are healthy protein muffins.
4.78 from 9 votes
dairy free allergen icon
gluten free allergy icon
soy free allergy icon
Prep Time 10 minutes
Cook Time 20 minutes
Total Time 30 minutes
Course Gluten Free Breakfast Recipes, Gluten Free Muffins Recipes, Gluten Free Snacks
Cuisine American
Servings 16 muffins
Calories 173 kcal

Ingredients
  

  • 1 ½ cups gluten free flour blend * see note
  • 1 cup almond flour * see note
  • 2 teaspoons baking powder aluminum free
  • ¼ cup collagen protein unflavored!
  • â…› teaspoon salt
  • ¾ cup coconut sugar or regular sugar
  • ¼ cup coconut oil melted
  • 2 ripe bananas
  • 2 large eggs
  • 1 cup non-dairy milk
  • 1 teaspoon pure vanilla extract
  • ¾ cup blueberries
  • â…“ cup Optional: pecans

Instructions
 

  • Preheat the oven to 350º F.
  • In a bowl, combine the dry ingredients and whisk to blend.
  • In a smaller bowl, add the bananas and use a fork to mash them .
  • Add the coconut oil, eggs, vanilla, almond milk to the bananas and whisk.
  • Pour the wet ingredients into the dry ingredients, add the blueberries and pecans. Mix until the batter is just barely blended. (Over mixing the batter leads to more dense muffins.)
  • Take a muffin pan and add parchment paper muffin liners. Fill each ¾ full with the muffin batter.
  • Bake for 20-22 minutes until the muffins are done. To test for doneness, insert a toothpick into the center of the muffins. If the toothpick comes out clean, it is done baking. If you see batter or crumbs, the muffins need to bake longer.

Notes

  1. To keep these muffins light and fluffy, do not overmix the batter.
  2. I have tested this recipe with King Arthur Measure for Measure GF and Bob’s Red Mill 1 to 1 GF blend. That doesn’t mean others will not work, I just have not tested other flours.
  3. Xanthan gum – If your gluten free flour blend doesn’t contain xanthan gum or guar gum, please add ¾ teaspoon.
  4. I highly suggest using almond flour and not almond meal. An Almond meal is more coarse and will make your muffins grainy.
  5. Store in an airtight container in the refrigerator. I like to freeze my muffins in a large freezer safe zip bag in the freezer.

SPECIAL NOTE

Please know that every gluten free flour blend has a different starch to grain ratio. If you use a blend I didn’t test, you may need to adjust your moisture levels in your baked goods.

Nutrition

Serving: 1muffinCalories: 173kcalCarbohydrates: 21gProtein: 4gFat: 10gSaturated Fat: 4gPolyunsaturated Fat: 1gMonounsaturated Fat: 1gTrans Fat: 1gCholesterol: 20mgSodium: 62mgPotassium: 125mgFiber: 3gSugar: 8gVitamin A: 44IUVitamin C: 2mgCalcium: 68mgIron: 1mg
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Nutrition Disclaimer

Nutritional information is an estimate provided to you as a courtesy. You should calculate the actual nutritional information with the products and brands you are using with your preferred nutritional calculator.

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20 Comments

  1. Made them again without thawing the blueberries and added collagen creamer and they came out even better!

  2. Made these without bananas (allergies) and without collagen (didn’t have any), and used thawed wild frozen blueberries from Trader Joe’s and they turned out so good!! These will definitely be a staple!! Thank you for the recipe!

  3. These sound so tasty and I want to make them. Can you leave out the banana and they would still taste as good?

  4. Just made these and they are delectable. I omitted the collagen because I didn’t have any and they were perfect. Next time I will try the collagen too!

  5. I’m all over these muffins! Great tips about freezing them individually, too! And a sneaky way to get more protein. Yay!