These gluten free apple muffins are super moist, have the perfect amount of cinnamon spice, and are entirely scrumptious! Nothing beats a freshly baked apple muffin because not only does it taste amazing, but they make a great grab-and-go breakfast!
You aren’t going to have a crumb leftover when you make these because they are going to be devoured!

Jump To:
Mornings can be hectic in the Fearless Dining household, so I wanted to create a recipe that was easy to eat on the go. Gluten free cinnamon apple muffins are the perfect fit for us because you don’t need any utensils at all! Just grab it, and we can hit the road. I love these are also dairy-free!
These gluten free muffins are incredible for breakfast, but they are excellent for many other things too. Brunch, dessert, or a snack are a few ideas. They are great for road trips, baby showers, or just when you want something a little sweet.

Why These Gluten Free Apple Muffins Are Great:
- These gluten free apple muffins do not taste gluten free. They are light and fluffy and have the perfect texture you want in a muffin.
- You can make them in about 35 minutes with minimal meal prep!
- As is, this easy recipe is gluten free and dairy-free.
- Every morsel of this healthy apple muffin recipe is filled with sweet apples and cinnamon. This truly is a great recipe!
- My recipe uses real ingredients that are easy to find in any grocery store. You can find fresh apples year round, but during apple season, find them at your local farmer's market for extra fresh flavor.
- These moist muffins make a great grab-and-go breakfast or put them in a lunchbox for an afternoon snack.
I just made these this afternoon - they’re so good! They might be my family’s new favorite !"
Michelle P., Facebook
If you are an apple fanatic like me, you will want to check out all of my delicious gluten free apple recipes!
Ingredient Notes:

- Gluten free flour blend - I tested this recipe using Bob's Red Mill 1 to 1 Gluten Free Flour Blend and King Arthur's Measure for Measure Gluten Free Blend. That doesn't mean others will not work, I just have not tested other flours.
- Xanthan gum - If your gluten free flour blend doesn’t contain xanthan gum or guar gum, please add 1 teaspoon.
- Salt - Use sea salt or kosher salt.
- Coconut oil - You can also use different vegetable oil or butter if you are not dairy-free
- Non-dairy milk - I used almond milk but other dairy-free kinds of milk will work but I do not recommend canned coconut milk.
- Eggs - Use size large eggs.
- Vanilla Extract - Use pure vanilla extract if you can instead of imitation vanilla.
- Apples - There are so many different types of fresh apples available; it can be hard to know which ones will taste the best in baked goods. Here are varieties that I typically use Fuji, Granny Smith, Honeycrisp, and Pink Lady. I often will use a combination of apples.
If you love apples as much as we do, check out this delicious Gluten Free French Apple Cakes recipe.
Fun Swaps:
- Add nuts like walnuts, almonds, or even macadamia nuts
- Sprinkle shredded coconut on top before baking.
- Mix in raisins or raisins
- White or dark chocolate chips
- Make a brown sugar crumb topping. If you want a streusel topping, use the topping recipe from my Gluten Free Coffee Cake recipe!
Recipe Step By Btep Directions:

Step 1: It is important to measure your gluten free flour correctly. I recommend using the Spoon Method. Use a spoon to fill the measuring cup with flour. Use a knife to level along the top to remove the extra flour.
Add your dry ingredients to a large

Step 2: Chop your apple into small pieces. In a medium bowl, add the wet ingredient sand diced apples. Diced apples are best because they blend into every bite. Mix well.

Step 3: Pour the wet ingredients into the dry ingredients and mix gently.
TIP: For best results, do NOT overmix your muffin batter. Mix it until it is just barely mixed. Do not use a standing mixer or food processor in this recipe or your muffins will turn out dense.

This is what your apple muffin batter will look like.

Step 4: Put muffin liners into a muffin tin and fill each about ¾ full with the muffin batter. I really prefer to use parchment paper muffin liners because the muffins don't stick to the paper. Optional: top with coarse sugar.
Step 5: Bake at 350º F for 30 minutes.
To see if they are done baking, insert a toothpick into the center of the muffin. If the toothpick comes out clean, it is done baking. If you see batter or crumbs, the muffins need to bake longer. The muffin tops will have a pale golden brown color.
Step 6: Carefully remove the muffins from the oven to a cooling rack.

Expert Tips and Recipe FAQ:
One of my favorite muffin baking tips is if you want your muffins to have a domed style top, bake at 425º F for the first 5 minutes then reduce the temperature to 350º F.
No, you can leave the peels on the apples for added fiber. Plus, leaving them on will save you a little bit of time prepping too. That is what is great about this apple muffin recipe, you can personalize it to meet your tastes.
These muffins will keep up to 4 days in an air-tight container, or up to 4 months in the freezer.
Yes, you can freeze these apple cinnamon muffins. The best way to freeze them is to individually wrap them in plastic wrap or place them in a freezer bag.
Once they are all packaged separately, then put them all in a larger airtight container. This will keep them fresher and prevent freezer burn. To thaw, you can just place them on the counter until they are ready to eat.
Many people who don’t understand gluten free eating, don’t realize that we can still eat amazing baked goods. To get started, take a look at this article I wrote Gluten Free Pantry Essentials and Equipment Recommendations.

This post was updated from an older January 2020 post with more detailed instructions.
Reader Review:
They turned out great!
Whitney L., Pinterest User
More Delicious Gluten Free Baked Goods:
- These Gluten Free Chocolate Cupcakes make a great birthday or bake sale treat.
- Everyone loves this sweet Gluten Free Banana Muffins recipe. Just grab some over-ripe bananas!
- My Gluten Free Honey Cake recipe has been getting rave reviews!
Recipe

Gluten Free Apple Cinnamon Muffins




Ingredients
- 2 cups gluten free flour blend * see note
- 1 cup sugar
- 1 teaspoon baking powder
- ½ teaspoon baking soda
- ⅛ teaspoon sea salt
- ⅓ cup butter or coconut oil
- 1 teaspoon pure vanilla extract
- 2 large eggs
- 1 teaspoon ground cinnamon
- ½ cup thinly sliced apples
- 1 cup non-dairy milk
Instructions
- Preheat the oven to 350º F. Set the oven rack to the middle position. Note if you want dome tops, see the Notes below for specific directions.
- In a large bowl, add the dry ingredients and whisk to blend.
- In a smaller bowl, add the wet ingredients and mix well. Add the apple slices.
- Pour the wet ingredients into the dry ingredients and mix. (See Notes below)
- Place liners into the muffin tin and fill each cup about ¾ full of muffin batter.
- Bake for 25 minutes until done. Check at the 20 minute mark by inserting a toothpick into the top of a muffin. If the toothpick comes out clean, the muffins are ready.
- Remove from the oven and cool on a cooling rack.
Video
Notes
- I have tested this recipe with King Arthur Measure for Measure GF, Bob's Red Mill 1 to 1 GF blend, and Authentic Foods Multi Blend in this recipe. That doesn't mean others will not work, I just have not tested other flours.
- If your gluten free flour blend doesn’t contain Xanthan Gum or Guar Gum, please add 1 teaspoon.
- To test for doneness, insert a toothpick into the center of a muffin. If the toothpick comes out clean, it is done baking. If you see batter or crumbs, the muffins need to bake longer.
- The secret to light and fluffy muffins is to just barely mix the batter. If you overmix the batter, your muffins will be denser.
- If you want your muffins to have a domed style top, bake at 425º F for the first 5 minutes then reduce the temperature to 350º.
- These muffins will keep up to 4 days in an air-tight container, or up to 4 months in the freezer.
Nutrition
Nutrition Disclaimer
Nutritional information is an estimate provided to you as a courtesy. You should calculate the actual nutritional information with the products and brands you are using with your preferred nutritional calculator.

If you love the recipes you find on my blog, I would love for you to sign up for my newsletter (and get my free gluten free lemon dessert e-cookbook!)
Misti St Pierre
These muffins were delicious! I doubled the recipe and made the muffins huge. They were so moist and delicious. I even forgot to add the vanilla and they were still flavourful. Lol
I'm loving your recipes. I made carrot cake cupcakes today.
Sandi Gaertner
I am so glad you loved them. Thank you so much for coming back to let me know!
wilhelmina
Loved these muffins! They are really light and full of yummy apple goodness! Perfect for Fall breakfast.
Sandi Gaertner
I am so glad you loved them Wilhelmina 🙂
Carmen Sammut
Muffins came really nice and fluffy. Can I use something else instead of non dairy milk
Sandi Gaertner
Hi Carmen, I am so glad you liked them. You can easily use regular milk if you are not dairy-free.