These gluten free apple muffins are super moist, have the perfect amount of cinnamon spice, and are entirely scrumptious! Nothing beats a freshly baked apple muffin because not only does it taste amazing, but they make a great grab-and-go breakfast!

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Mornings can be hectic in the Fearless Dining household, so I wanted to create a recipe that was easy to eat on the go. Gluten free cinnamon apple muffins are the perfect fit for us because you don’t need any utensils! Just grab it, and we can hit the road. I love that these are also dairy-free!
These gluten free muffins are incredible for breakfast, but they are excellent for many other things too. Brunch, dessert, or a snack are a few ideas. They are great for road trips, baby showers, or just when you want something a little sweet.
You won’t have a crumb leftover when you make these because they will be devoured!
If you wonder which gluten free flour blend to use for gluten free muffins, I tested four easy-to-find gluten-free flour blends to find out.

Why This Recipe is Great:
- These gluten free apple muffins do not taste gluten free. They are light and fluffy and have the perfect texture you want in a muffin.
- You can make this gluten free apple muffins recipe in about 35 minutes with minimal meal prep!
- As is, this easy recipe is gluten free and dairy-free.
- Every morsel of this healthy apple muffin recipe is filled with sweet apples and cinnamon. This truly is a great recipe!
- My recipe uses real ingredients that are easy to find in any grocery store. You can find fresh apples year round, but during apple season, find them at your local farmer's market for extra fresh flavor.
- These moist muffins make a great grab-and-go breakfast or put in a lunchbox for an afternoon snack.
I just made these this afternoon - they’re so good! They might be my family’s new favorite !"
Michelle P., Facebook
If you are an apple fanatic like me, you will want to check out my delicious gluten free apple recipes!
This is one of my favorite gluten-free flour blends for cookies, cakes, pie crust, biscuits, and muffins! (Do not use this flour blend for yeast recipes.)
Ingredient Notes:

- Gluten Free Flour Blend - I tested this recipe using Bob's Red Mill 1 to 1 Gluten Free Flour Blend and King Arthur's Measure for Measure Gluten Free Blend.
- DIY Gluten Free Flour Blend - My homemade gluten free flour blend works really well in this recipe. My blend is also gum-free.
- Xanthan Gum - If your gluten free flour blend doesn’t contain xanthan gum or guar gum, please add 1 teaspoon.
- Baking Powder and Baking Soda - Use aluminum-free baking powder.
- Salt - Use sea salt or kosher salt.
- Coconut Oil - You can also use canola oil or butter if you are not dairy-free
- Non-Dairy Milk - I used almond milk, but other dairy-free kinds of milk will work. I do not recommend canned coconut milk.
- Eggs - Use size large eggs.
- Vanilla Extract - Use pure vanilla extract instead of imitation vanilla.
- Apples - So many different types of fresh apples are available; it can be hard to know which ones taste the best in baked goods. Here are the varieties that I typically use: Fuji, Granny Smith, Honeycrisp, and Pink Lady. I often use a combination of apples.
If you love apples as much as we do, check out this delicious Gluten Free French Apple Cakes recipe.
Tips For Sucess:
For best results, do NOT overmix your muffin batter. Mix it until it is just barely mixed. Do not use a standing mixer or food processor in this recipe; your muffins will turn out dense.
Need help with your muffins? I have a great gluten free muffin troubleshooting guide, and here are my favorite tools for making muffins.
Substitutions:
- Add nuts like walnuts, almonds, or even macadamia nuts
- Sprinkle shredded coconut on top before baking.
- Mix in raisins or raisins.
- White or dark chocolate chips
- Make a brown sugar crumb topping. If you want a streusel topping, use the topping recipe from my Gluten Free Coffee Cake recipe!
Recipe Step-By-Step Directions:

Step 1: It is important to measure your gluten free flour correctly. I recommend using the Spoon Method. Use a spoon to fill the measuring cup with flour. Use a knife to level along the top to remove the extra flour.
Add your dry ingredients to a large

Step 2: Chop your apple into small pieces. In a medium bowl, add the wet ingredients and diced apples. Diced apples are best because they blend into every bite. Mix well.
🔑 Sandi says: I like to leave my peels on the apples, but you can peel the apples if you prefer.

Step 3: Pour the wet ingredients into the dry ingredients and mix gently.

NOTE: This is what your apple muffin batter will look like. If your batter is thick, add more milk. Some gluten free flour blends are starchy and require more liquid than others.

One of my favorite muffin baking tips is if you want your muffins to have a domed style top, bake at 425º F for the first 5 minutes, then reduce the temperature to 350º F.
Step 4: Put muffin liners into a muffin tin and fill each about ¾ full with the muffin batter. I really prefer to use parchment paper muffin liners because the muffins don't stick to the paper. Optional: top with coarse sugar.
Step 5: Bake at 350º F for 30 minutes.
To see if the gluten free cinnamon apple muffins are done baking, insert a toothpick into the center of the muffin. If the toothpick comes out clean, it is done baking. If you see batter or crumbs, the muffins need to be baked longer. The muffin tops will have a pale golden brown color.
Step 6: Carefully remove the muffins from the oven to a cooling rack.

Recipe FAQ:
No, you can leave the peels on the apples for added fiber. Plus, leaving them on will save you some time prepping, too. That is great about this apple muffin recipe. You can personalize it to meet your tastes.
These muffins will keep fresh for up to 4 days in an airtight container or up to 4 months in the freezer.
Yes, you can freeze these apple cinnamon muffins. The best way to freeze them is to individually wrap them in plastic or a freezer bag.
Once they are all packaged separately, please put them in a larger airtight container. This will keep them fresher and prevent freezer burn. You can place them on the counter to thaw until they are ready to eat.

Reader Review:
They turned out great! Awesome recipe!
Whitney L., Pinterest User
More Delicious Gluten Free Baked Goods:
- These Gluten Free Chocolate Cupcakes make a great birthday or bake sale treat.
- Everyone loves this sweet Gluten Free Banana Muffins recipe. Just grab some over-ripe bananas!
- My Gluten Free Honey Cake recipe has been getting rave reviews!
📖 Recipe

Gluten Free Apple Cinnamon Muffins




*As an Amazon Associate, I earn a small commission from qualifying purchases.
Ingredients
- 2 cups gluten free flour blend * see note
- 1 cup sugar
- 1 teaspoon baking powder aluminum-free
- ½ teaspoon baking soda
- ⅛ teaspoon sea salt
- ⅓ cup butter or coconut oil
- 1 teaspoon pure vanilla extract
- 2 large eggs
- 1 teaspoon ground cinnamon
- ½ cup thinly sliced apples
- 1 cup non-dairy milk
Instructions
- Preheat the oven to 350º F. Set the oven rack to the middle position. Note if you want dome tops, see the Notes below for specific directions.
- In a large bowl, add the dry ingredients and whisk to blend.
- In a smaller bowl, add the wet ingredients and mix well. Add the apple slices.
- Pour the wet ingredients into the dry ingredients and mix. (See Notes below)
- Place liners into the muffin tin and fill each cup about ¾ full of muffin batter.
- Bake for 25 minutes until done. Check at the 20 minute mark by inserting a toothpick into the top of a muffin. If the toothpick comes out clean, the muffins are ready.
- Remove from the oven and cool on a cooling rack.
Video
Notes
- I have tested this recipe with King Arthur Measure for Measure GF, Bob's Red Mill 1 to 1 GF blend, and my DIY Gluten Free Flour Blend (gum-free) in this recipe. That doesn't mean others will not work; I just have not tested other flours.
- If your gluten free flour blend doesn’t contain Xanthan Gum or Guar Gum, please add 1 teaspoon.
- To test for doneness, insert a toothpick into the center of a muffin. If the toothpick comes out clean, it is done baking. If you see batter or crumbs, the muffins need to be baked longer.
- The secret to light and fluffy muffins is to barely mix the batter. If you overmix the batter, your muffins will be denser.
- If you want your muffins to have a domed style top, bake at 425º F for the first 5-8 minutes, then reduce the temperature to 350º.
- These muffins will keep up to 4 days in an air-tight container or up to 4 months in the freezer.
SPECIAL NOTE
Please know that every gluten free flour blend has a different starch to grain ratio. If you use a blend I didn't test, you may need to adjust your moisture levels in your baked goods.
Nutrition
Nutrition Disclaimer
Nutritional information is an estimate provided to you as a courtesy. You should calculate the actual nutritional information with the products and brands you are using with your preferred nutritional calculator.
This post was updated from an older January 2020 post with more detailed instructions.
Fearless Dining
Simplifying the art of baking and cooking gluten-free recipes.
Misti St Pierre
These muffins were delicious! I doubled the recipe and made the muffins huge. They were so moist and delicious. I even forgot to add the vanilla and they were still flavourful. Lol
I'm loving your recipes. I made carrot cake cupcakes today.
Sandi Gaertner
I am so glad you loved them. Thank you so much for coming back to let me know!
wilhelmina
Loved these muffins! They are really light and full of yummy apple goodness! Perfect for Fall breakfast.
Sandi Gaertner
I am so glad you loved them Wilhelmina 🙂
Carmen Sammut
Muffins came really nice and fluffy. Can I use something else instead of non dairy milk
Sandi Gaertner
Hi Carmen, I am so glad you liked them. You can easily use regular milk if you are not dairy-free.